Saturday, October 25, 2008

Operads and their Monads

Hardly a day goes by at the n-Category Cafe without operads being mentioned. So it's time to write some code illustrating them.


> {-# LANGUAGE FlexibleInstances #-}

> import Data.Monoid
> import Control.Monad.Writer
> import Control.Monad.State


Let's define a simple tree type:


> data Tree a = Leaf a | Tree [Tree a] deriving (Eq,Show)


Sometimes we want to apply a function to every element of the tree. That's provided by the fmap member of the Functor type class.


> instance Functor Tree where
> fmap f (Leaf x) = Leaf (f x)
> fmap f (Tree ts) = Tree $ map (fmap f) ts


But just as we can't use map to apply monadic functions to a list (we'd write mapM print [1,2,3]), we can't use fmap to apply them to our tree. What we need is a monadic version of fmap. Here's a suitable type class:


> class FunctorM c where
> fmapM :: Monad m => (a -> m b) -> c a -> m (c b)


(I could have used Data.Traversable but that entails Data.Foldable and that's too much work.)

And now we can implement a monadic version of Tree's Functor instance:


> instance FunctorM Tree where
> fmapM f (Leaf x) = do
> y <- f x
> return (Leaf y)
> fmapM f (Tree ts) = do
> ts' <- mapM (fmapM f) ts
> return (Tree ts')


We can use fmapM to extract the list of elements of a container type:


> serialise a = runWriter $ fmapM putElement a
> where putElement x = tell [x]


Not only does serialise suck out the elements of a container, it also spits out an empty husk in which all of the elements have been replaced by (). We can think of the latter as the 'shape' of the original structure with the original elements removed. We can formalise this as


> type Shape t = t ()


So we have:


> serialise :: FunctorM t => t a -> (Shape t,[a])


Keeping the shape around allows is to invert serialise to give:


> deserialise :: FunctorM t => Shape t -> [a] -> (t a, [a])
> deserialise t = runState (fmapM getElement t) where
> getElement () = do
> x:xs <- get
> put xs
> return x


(That's a bit like using the supply monad. This function also returns the leftovers.)

We can also write (apologies for the slightly cryptic use of the writer monad):


> size :: FunctorM t => t a -> Int
> size a = getSum $ execWriter $ fmapM incCounter a
> where incCounter _ = tell (Sum 1)


Let's try an example. Here's an empty tree:


> tree1 = Tree [Tree [Leaf (),Leaf ()],Leaf ()]


We can pack a bunch of integers into it:


> ex1 = fst $ deserialise tree1 [1,2,3]


And get them back out again:


> ex2 = serialise ex1


serialise separates the shape from the data, something you can read lots more about at Barry Jay's web site.

Remember that trees are also monads:


> instance Monad Tree where
> return x = Leaf x
> t >>= f = join (fmap f t) where
> join (Leaf t) = t
> join (Tree ts) = Tree (fmap join ts)


The join operation for a tree grafts the elements of a tree of trees back into the tree.

Right, that's enough about trees and shapes for now.

Operads are a bit like the plumbing involved in installing a sprinkler system. Suppose you have a piece, A that splits a single pipe into two:


______
/
/ ____
____/ /
A /
____ \
\ \____
\
\______


And you have two more pipes B and C that look like this:


______
/
/ ____
/ /
____/ \____

B or C
____ ____
\ /
\ \____
\
\______



then you can 'compose' them to make a larger system like this:




______
/
/ ____
/ /
_________/ \____
/ B
/ _______ ____
/ / \ /
/ / \ \____
/ / \
____/ / \______
A /
____ \ ______
\ \ /
\ \ / ____
\ \ / /
\ \_______/ \____
\ C
\_________ ____
\ /
\ \____
\
\______


(Vim rectangular mode FTW!)

The important thing to note here is that as A had two outputs (or inputs, depending on your point of view) you can attach two more pieces, like B and C, directly to it.

Call the number of outlets the 'degree' of the system. If A has degree n then we can attach n more systems, A1...An to it and the resulting system will have degree degree(A1)+...+degree(An). We can write the result as A(A1,...,An).

We also have the 'identity' pipe that looks like this:


_____________

identity
_____________


Formally, an operad is a collection of objects, each of which has a 'degree' that's an integer n, n≥0, depending on your application), an identity element of degree 1, and a composition law:


> class Operad a where
> degree :: a -> Int
> identity :: a
> o :: a -> [a] -> a


o is the composition operation. If f has degree n then we can apply it to a list of n more objects. So we only expect to evaluate f `o` fs successfully if degree f == length fs.

There are many identities we'd expect to hold. For example f `o` [identities,...,identity] == f, because adding plain sections of pipe has no effect. We also expect some associativity conditions coming from the fact that it doesn't matter what order we build a pipe assembly in, it'll still function the same way.

We can follow this pipe metaphor quite closely to define what I think of as the prototype Operad. A Fn a is a function that takes n inputs of type a and returns one of type a. As we can't easily introspect and find out how many arguments such a function expects, we also store the degree of the function with the function:


> data Fn a = F { deg::Int, fn::[a] -> a }

> instance Show a => Show (Fn a) where
> show (F n _) = "<degree " ++ show n ++ " function>"


unconcat is a kind of inverse to concat. You give a list of integers and it chops up a list into pieces with lengths corresponding to your integers. We use this to unpack the arguments to f `o` gs into pieces suitable for the elements of gs to consume.


> unconcat [] [] = []
> unconcat (n:ns) xs = take n xs : unconcat ns (drop n xs)

> instance Operad (Fn a) where
> degree = deg
> f `o` gs = let n = sum (map degree gs)
> in F n (fn f . zipWith fn gs . unconcat (map degree gs))
> identity = F 1 head


Now compute an example, f(f1,f2,f3) applied to [1,2,3]. It should give 1+1+2*3=8.


> ex3 = fn (f `o` [f1,f2]) [1,2,3] where
> f = F 2 (\[x,y] -> x+y)
> f1 = F 1 (\[x] -> x+1)
> f2 = F 2 (\[x,y] -> x*y)


(That's a lot like lambda calculus without names. Operads are a bit like n-ary combinators.)

Now I'm going to introduce a different looking operad. Think of V as representing schemes for dicing the real line. Here are some examples:


|0.25|0.25| 0.5 |

|0.1|0.1| 0.8 |


If A divides up the real line into n pieces then you could divide up each of the n pieces using their own schemes. This means that dicing schemes compose. So if we define A, B and C as:


A = |0.5|0.5|

B = |0.75|0.25|
C = |0.1|0.1|0.8|


Then A(B,C) is:


|0.375|0.125|0.05|0.05|0.4|


We could implement V as a list of real numbers, but it's more fun to generalise to any monoid and not worry about divisions summing to 1:


> data V m = V { unV :: [m] } deriving (Eq,Show)


This becomes an operad by allowing the monoid value in a 'parent' scheme multiply the values in a 'child'.


> instance Monoid m => Operad (V m) where
> degree (V ps) = length ps
> (V as) `o` bs = V $ op as (map unV bs) where
> op [] [] = []
> op (a:as) (b:bs) = map (mappend a) b ++ op as bs
> identity = V [mempty]


For example, if d1 cuts the real line in half, and d2 cuts it into thirds, then d1(d1,d2) will cut it into five pieces of lengths 1/4,1/4,1/6,1/6,1/6:


> ex4 = d1 `o` [d1,d2] where
> d1 = V [Product (1/2),Product (1/2)]
> d2 = V [Product (1/3),Product (1/3),Product (1/3)]


If the elements in a V are non-negative and sum to 1 we can think of them as probability distributions. The composition A(A1,...,An) is the distribution of all possible outcomes you can get by selecting a value i in the range {1..n} using distribution A and then selecting a second
value conditionally from distribution Ai. We connect with the recent n-category post on entropy.

In fact we can compute the entropy of a distrbution as follows:


> h (V ps) = - (sum $ map (\(Product x) -> xlogx x) ps) where
> xlogx 0 = 0
> xlogx x = x*log x/log 2


We can now look at the 'aside' in that post. From an element of V we can produce a function that computes a corresponding linear combination (at least for Num types):


> linear (V ps) xs = sum $ zipWith (*) (map (\(Product x) -> x) ps) xs


We can now compute the entropy of a distribution in two different ways:


> (ex5,ex6) = (h (d1 `o` [d1,d2]),h d1 + linear d1 (map h [d1,d2])) where
> d1 = V [Product 0.5,Product 0.5]
> d2 = V [Product 0.25,Product 0.75]


Now according to this paper on operads we can build a monad from an operad. Here's the construction:


> data MonadWrapper op a = M { shape::op, value::[a] } deriving (Eq,Show)


(The field names aren't from the paper but they do give away what's actually going on...)

The idea is that an element of this construction consists of an element of the operad of degree n, and an n element list. It's a functor in an obvious way:


> instance Functor (MonadWrapper o) where
> fmap f (M o xs) = M o (map f xs)


It's also a FunctorM:


> instance FunctorM (MonadWrapper o) where
> fmapM f (M s c) = do
> c' <- mapM f c
> return $ M s c'


We can make the construction a monad as follows:


> instance Operad o => Monad (MonadWrapper o) where
> return x = M identity [x]
> p >>= f = join (fmap f p) where
> join (M p xs) = M (p `o` map shape xs) (concatMap value xs)


Now for something to be a monad there are various laws that needs to be satisfied. These follow from the rules (which I haven't explicitly stated) for an operad. When I first looked at that paper I was confused - it seemed that the operad part and the list part didn't interact with each other. And then I suddenly realised what was happening. But hang on for a moment...

Tree shapes make nice operads. The composition rule just grafts child trees into the leaves of the parent:


> instance Operad (Tree ()) where
> degree t = length (snd (serialise t))
> identity = Leaf ()
> t `o` ts = let (r,[]) = deserialise t ts in r >>= id


We can write that more generically so it works with more than trees:

> data OperadWrapper m = O { unO::Shape m }


> instance (FunctorM m,Monad m) => Operad (OperadWrapper m) where
> degree (O t) = size t
> identity = O (return ())
> (O t) `o` ts = let (r,[]) = deserialise t (map unO ts) in O (r >>= id)


So let's use the construction above to make a monad. But what actually is this monad? Each element is a pair with (1) a tree shape of degree n and (2) an n-element list. In other words, it's just a serialised tree. We can define these isomorphisms to make that clearer:


> iso1 :: FunctorM t => t x -> MonadWrapper (t ()) x
> iso1 t = uncurry M (serialise t)

> iso2 :: FunctorM t => MonadWrapper (t ()) x -> t x
> iso2 (M shape contents) = let (tree,[]) = deserialise shape contents in tree


So, for example:


> ex7 = iso2 (iso1 tree) where
> tree = Tree [Tree [Leaf "Birch",Leaf "Oak"],Leaf "Cypress",Leaf "Binary"]


That construction won't work for all monads, just those monads that come from operads. I'll leave you to characterise those.

And now we have it: a way to think about operads from a computational perspective. They're the shapes of certain monadic serialisable containers. Operadic composition is the just the same grafting operation used in the join operation, using values () as the graft points.

I have a few moments spare so let's actually do something with an operad. First we need the notion of a free operad. This is basically just a set of 'pipe' parts that we can stick together with no equations holding apart from those inherent in the definition of an operad. This is different from the V operad where many different ways of apply the o operator can result in the same result. We can use any set of parts, as long as we can associate an integer with each part:


> class Graded a where
> grade :: a -> Int


The free operad structure is just a tree:


> data FreeOperad a = I | B a [FreeOperad a] deriving Show


I will be the identity, but it will also serve as a 'terminator' like the way there's always a [] at the end of a list.

An easy way to make a single part an element of an operad:


> b n = let d = grade n in B n (replicate d I)


Here's the instance:


> instance Graded a => Operad (FreeOperad a) where
> degree I = 1
> degree (B _ xs) = sum (map degree xs)
> identity = I
> I `o` [x] = x
> B a bs `o` xs = let arities = map degree bs
> in B a $ zipWith o bs (unconcat arities xs)


Now I'm going to use this to make an operad and then a monad:


> instance Graded [a] where
> grade = length

> type DecisionTree = MonadWrapper (FreeOperad [Float])


What we get is a lot like the probability monad except it doesn't give the final probabilities. Instead, it gives the actual tree of possibilities. (I must also point out this hpaste by wli.)


> test = do
> a <- M (b [Product 0.5,Product 0.5]) [1,2]
> b <- M (b [Product (1/3.0),Product (1/3.0),Product (1/3.0)]) [1,2,3]
> return $ a+b


Now we can 'flattten' this tree so that the leaves have the final probabilities:


> flatten :: Monoid m => FreeOperad [m] -> V m
> flatten I = V [mempty]
> flatten (B ms fs) = V $ concat $ zipWith (map . mappend) ms (map (unV . flatten) fs)


This is a morphism of operads. (You can probably guess the definition of such a thing.) It induces a morphism of monads:


> liftOp :: (Operad a,Operad b) => (a -> b) -> MonadWrapper a x -> MonadWrapper b x
> liftOp f (M shape values) = M (f shape) values


liftOp flatten test will give you the final probabilities.

There may just be a possible application of this stuff. The point of separating shape from data is performance. You can store all of your data in flat arrays and do most of your work there. It means you can write fast tight loops and only rebuild the original datatype if needed at the end. If you're lucky you can precompute the shape of the result, allowing you to preallocate a suitable chunk of memory for your final answer to go into. What the operad does is allow you to extend this idea to monadic computations, for suitable monads. If the 'shape' of the computation is independent of the details of the computation, you can use an operad to compute that shape, and then compute the contents of the corresponding array separately. If you look at the instance for MonadWrapper you'll see that the part of the computation that deals with the data is simply a concatMap.

BTW In some papers the definition restricts the degree to ≥1. But that's less convenient for computer science applications. If it really bothers you then you can limit yourself to thinking about containers that contain at least one element.

10 comments:

Dionysus said...

FYI, the Barry Jay link is broken.

Jim Stuttard said...

ghc-6.8.2 doesn't like
data OperadWrapper m = O O::Shape m

>parse error on input ::

Creighton Hogg said...

@jim That's because it needs to be O {...}.

Your Fn operad in particular got me thinking about a few things. Chaining a large group of Fn's together via the o function is, really, like gluing together a parse tree. This makes my brain tickle with the relationship between parse trees & genetic programming, wondering if there is a way to generalize what is an 'evolvable' structure to include both lists and parse trees as special cases.

I'll have to mull it over a bit and see if there's really any relationship there or not.

In any case, thanks for the intro to operads!

sigfpe said...

Jim,

My markup program gobbled the braces so I put them back manually.

Creighton,

They look a lot like parse trees for a language in which you can't duplicate anything, which is a little awkward.

Alexey said...

This looks like it would be better written with dependent types, so that degree could be a part of the type.

sigfpe said...

Alexey,

Like many mathematical constructions, it'd be nice to have dependent types here. On the other hand, I wonder if it might get tricky to define types for things like "trees with precisely 5 leaves".

Corey O'Connor said...

I wish I had learned this earlier...

I have been working on a modular synth framework in Haskell for a while now. The possible practical application you describe is close to what had to be used to achieve good performance.

On the high level audio sample generation is partitioned into three phases: 1) Definition of the audio synthesis pipeline. 2) Initialization of the pipeline to start generating at a specific point in time. 3) Iteration to generate subsequent samples.

One specific performance issue involved the need to store state at each node in the tree that defined the synthesis pipeline. This state needed to be mutable to achieve the performance requirements. At first the pipeline's tree contained mutable references at each node. This provided good performance but not quite enough and had other undesirable effects. The technique used to achieve the performance requirement is largely identical to what you describe: The shape of the tree is precomputed in phase 1. A mutable array containing the state of the generators is initialized in phase 2. A tight loop is used to generate subsequent samples in phase 3 referencing the mutable array for state.

Course I arrived at this over several iterations ignorant of Operads throughout. Had I learned this earlier I'm pretty sure it would have saved me a lot of effort. Great post, as always! :-)

sigfpe said...

Corey,

I think I know exactly what you're talking about because I've gone through similar thought processes while thinking about audio synthesis in Haskell myself.

I'm not sure operads are quite the right structure but the separation of shape and data is key. I was thinking of targetting microcontrollers for audio and for that you don't want the overhead of maintaining a linked network of generator nodes. You just want raw data, and code that knows where to find what it needs in that data.

Creighton Hogg said...

@sigfpe
I assume by "no duplication" you're referring to the fact that there's no way to "glue" two pipes of an operad together so that they take the same input.

I agree that would normally be inconvenient for thinking about a parse tree, but the metaphor I was pushing is that operads of degree n>0 are like n-arity functions & the degree 0 are like your terminals in your genetic programming environment.

Again, it's just a metaphor and nothing concrete at the moment.

leithaus said...

Dan -- what is the relationship between operads and the usual categorical story of universal algebra? Do operads take this idea up one level of categorification?

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